Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3044944..3045089 | Replicon | chromosome |
| Accession | NZ_CP085824 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Ivysaur | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3044946..3045049 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3044944..3045089 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF36_RS14915 | 3040144..3040362 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| LJF36_RS14920 | 3040664..3040762 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF36_RS14925 | 3041081..3043060 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF36_RS14930 | 3043474..3043752 | + | 279 | WP_001575998.1 | excisionase | - |
| LJF36_RS14935 | 3043727..3044806 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3044944..3045089 | + | 146 | - | - | Antitoxin |
| - | 3044946..3045049 | - | 104 | - | - | Toxin |
| LJF36_RS14940 | 3045189..3045542 | - | 354 | WP_000722370.1 | YebY family protein | - |
| LJF36_RS14945 | 3045559..3046434 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF36_RS14950 | 3046435..3046809 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF36_RS14955 | 3046947..3047177 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF36_RS14960 | 3047285..3047941 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF36_RS14965 | 3047965..3048663 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 3003971..3066959 | 62988 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222091 NZ_CP085824:c3045049-3044946 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT222091 NZ_CP085824:3044944-3045089 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
