Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1841741..1841886 | Replicon | chromosome |
| Accession | NZ_CP085818 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Clefairy | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1841781..1841884 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1841741..1841886 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF66_RS08750 | 1838167..1838865 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| LJF66_RS08755 | 1838889..1839545 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF66_RS08760 | 1839653..1839883 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF66_RS08765 | 1840021..1840395 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF66_RS08770 | 1840396..1841271 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF66_RS08775 | 1841288..1841641 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 1841741..1841886 | - | 146 | - | - | Antitoxin |
| - | 1841781..1841884 | + | 104 | - | - | Toxin |
| LJF66_RS08780 | 1842024..1843103 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LJF66_RS08785 | 1843078..1843356 | - | 279 | WP_001575998.1 | excisionase | - |
| LJF66_RS08790 | 1843770..1845749 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF66_RS08795 | 1846068..1846166 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF66_RS08800 | 1846468..1846686 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 1836079..1895785 | 59706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221940 NZ_CP085818:1841781-1841884 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221940 NZ_CP085818:c1841886-1841741 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
