Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2261386..2261531 | Replicon | chromosome |
| Accession | NZ_CP085816 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Slowpoke | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2261388..2261491 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2261386..2261531 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF68_RS11280 | 2256586..2256804 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| LJF68_RS11285 | 2257106..2257204 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF68_RS11290 | 2257523..2259502 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF68_RS11295 | 2259916..2260194 | + | 279 | WP_001575998.1 | excisionase | - |
| LJF68_RS11300 | 2260169..2261248 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2261386..2261531 | + | 146 | - | - | Antitoxin |
| - | 2261388..2261491 | - | 104 | - | - | Toxin |
| LJF68_RS11305 | 2261631..2261984 | - | 354 | WP_000722370.1 | YebY family protein | - |
| LJF68_RS11310 | 2262001..2262876 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF68_RS11315 | 2262877..2263251 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF68_RS11320 | 2263389..2263619 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF68_RS11325 | 2263727..2264383 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF68_RS11330 | 2264407..2265105 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2215142..2267193 | 52051 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221883 NZ_CP085816:c2261491-2261388 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221883 NZ_CP085816:2261386-2261531 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
