Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2457293..2457438 | Replicon | chromosome |
| Accession | NZ_CP085814 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Plusle | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2457333..2457436 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2457293..2457438 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF38_RS11695 | 2453719..2454417 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| LJF38_RS11700 | 2454441..2455097 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF38_RS11705 | 2455205..2455435 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF38_RS11710 | 2455573..2455947 | + | 375 | WP_134938112.1 | CopC domain-containing protein YobA | - |
| LJF38_RS11715 | 2455948..2456823 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF38_RS11720 | 2456840..2457193 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 2457293..2457438 | - | 146 | - | - | Antitoxin |
| - | 2457333..2457436 | + | 104 | - | - | Toxin |
| LJF38_RS11725 | 2457576..2458655 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LJF38_RS11730 | 2458630..2458908 | - | 279 | WP_001575998.1 | excisionase | - |
| LJF38_RS11735 | 2459322..2461301 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF38_RS11740 | 2461620..2461718 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF38_RS11745 | 2462020..2462238 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 2451631..2511337 | 59706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221840 NZ_CP085814:2457333-2457436 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221840 NZ_CP085814:c2457438-2457293 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
