Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3786902..3787047 | Replicon | chromosome |
| Accession | NZ_CP085797 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Latios | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3786904..3787007 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3786902..3787047 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF56_RS18370 | 3782102..3782320 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| LJF56_RS18375 | 3782622..3782720 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF56_RS18380 | 3783039..3785018 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF56_RS18385 | 3785432..3785710 | + | 279 | WP_001575998.1 | excisionase | - |
| LJF56_RS18390 | 3785685..3786764 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3786902..3787047 | + | 146 | - | - | Antitoxin |
| - | 3786904..3787007 | - | 104 | - | - | Toxin |
| LJF56_RS18395 | 3787147..3787500 | - | 354 | WP_000722370.1 | YebY family protein | - |
| LJF56_RS18400 | 3787517..3788392 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF56_RS18405 | 3788393..3788767 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF56_RS18410 | 3788905..3789135 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF56_RS18415 | 3789243..3789899 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF56_RS18420 | 3789923..3790621 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 3750874..3792709 | 41835 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221448 NZ_CP085797:c3787007-3786904 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221448 NZ_CP085797:3786902-3787047 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
