Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3157208..3157353 | Replicon | chromosome |
| Accession | NZ_CP085794 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Greninja | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3157248..3157351 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3157208..3157353 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF60_RS15040 | 3153634..3154332 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| LJF60_RS15045 | 3154356..3155012 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF60_RS15050 | 3155120..3155350 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF60_RS15055 | 3155488..3155862 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF60_RS15060 | 3155863..3156738 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF60_RS15065 | 3156755..3157108 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 3157208..3157353 | - | 146 | - | - | Antitoxin |
| - | 3157248..3157351 | + | 104 | - | - | Toxin |
| LJF60_RS15070 | 3157491..3158570 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LJF60_RS15075 | 3158545..3158823 | - | 279 | WP_001575998.1 | excisionase | - |
| LJF60_RS15080 | 3159237..3161216 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF60_RS15085 | 3161535..3161633 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF60_RS15090 | 3161935..3162153 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 3151546..3211252 | 59706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221372 NZ_CP085794:3157248-3157351 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221372 NZ_CP085794:c3157353-3157208 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
