Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1841469..1841614 | Replicon | chromosome |
| Accession | NZ_CP085793 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain Poochyena | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1841509..1841612 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1841469..1841614 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF61_RS08740 | 1837895..1838593 | - | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| LJF61_RS08745 | 1838617..1839273 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LJF61_RS08750 | 1839381..1839611 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF61_RS08755 | 1839749..1840123 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF61_RS08760 | 1840124..1840999 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJF61_RS08765 | 1841016..1841369 | + | 354 | WP_000722370.1 | YebY family protein | - |
| - | 1841469..1841614 | - | 146 | - | - | Antitoxin |
| - | 1841509..1841612 | + | 104 | - | - | Toxin |
| LJF61_RS08770 | 1841752..1842831 | - | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LJF61_RS08775 | 1842806..1843084 | - | 279 | WP_001575998.1 | excisionase | - |
| LJF61_RS08780 | 1843498..1845477 | + | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| LJF61_RS08785 | 1845796..1845894 | + | 99 | WP_223151200.1 | hypothetical protein | - |
| LJF61_RS08790 | 1846196..1846414 | + | 219 | WP_001524708.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sodCI / sopE2 / sopE2 | 1835807..1895513 | 59706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221340 NZ_CP085793:1841509-1841612 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221340 NZ_CP085793:c1841614-1841469 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
