Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relB-yefM/YoeB-RelB |
| Location | 1233822..1234332 | Replicon | chromosome |
| Accession | NZ_CP085785 | ||
| Organism | Synechococcus elongatus PCC 6301 | ||
Toxin (Protein)
| Gene name | relB | Uniprot ID | Q8KPS4 |
| Locus tag | PCC6301pg_RS06285 | Protein ID | WP_011242657.1 |
| Coordinates | 1233822..1234085 (-) | Length | 88 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | Q31NY1 |
| Locus tag | PCC6301pg_RS06290 | Protein ID | WP_011242656.1 |
| Coordinates | 1234078..1234332 (-) | Length | 85 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCC6301pg_RS06260 (PCC6301pg_1260) | 1229996..1232446 | - | 2451 | WP_011242661.1 | glycosyltransferase family 39 protein | - |
| PCC6301pg_RS06265 (PCC6301pg_1261) | 1232534..1232947 | - | 414 | WP_011242660.1 | type II toxin-antitoxin system VapC family toxin | - |
| PCC6301pg_RS06270 (PCC6301pg_1262) | 1232944..1233186 | - | 243 | WP_190528567.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| PCC6301pg_RS06275 (PCC6301pg_1263) | 1233241..1233423 | + | 183 | WP_272948008.1 | tyrosine-type recombinase/integrase | - |
| PCC6301pg_RS06280 (PCC6301pg_1264) | 1233462..1233695 | + | 234 | WP_231621315.1 | DUF2281 domain-containing protein | - |
| PCC6301pg_RS06285 (PCC6301pg_1265) | 1233822..1234085 | - | 264 | WP_011242657.1 | Txe/YoeB family addiction module toxin | Toxin |
| PCC6301pg_RS06290 (PCC6301pg_1266) | 1234078..1234332 | - | 255 | WP_011242656.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| PCC6301pg_RS06295 (PCC6301pg_1267) | 1234454..1234714 | - | 261 | WP_011242655.1 | DUF2442 domain-containing protein | - |
| PCC6301pg_RS06300 (PCC6301pg_1268) | 1234717..1234965 | - | 249 | WP_011377918.1 | DUF4160 domain-containing protein | - |
| PCC6301pg_RS06305 (PCC6301pg_1269) | 1234965..1235309 | - | 345 | WP_011242653.1 | DUF2442 domain-containing protein | - |
| PCC6301pg_RS06310 (PCC6301pg_1270) | 1235314..1235574 | - | 261 | WP_011242652.1 | DUF4160 domain-containing protein | - |
| PCC6301pg_RS06315 (PCC6301pg_1271) | 1235726..1235950 | + | 225 | WP_039755738.1 | hypothetical protein | - |
| PCC6301pg_RS06320 (PCC6301pg_1272) | 1235954..1236370 | + | 417 | WP_011377919.1 | type II toxin-antitoxin system VapC family toxin | - |
| PCC6301pg_RS06325 (PCC6301pg_1273) | 1236522..1237004 | + | 483 | WP_173282542.1 | glutathione peroxidase | - |
| PCC6301pg_RS06330 (PCC6301pg_1274) | 1237030..1238037 | + | 1008 | WP_011377920.1 | acyl-CoA dehydrogenase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 88 a.a. Molecular weight: 10434.75 Da Isoelectric Point: 6.9760
>T221299 WP_011242657.1 NZ_CP085785:c1234085-1233822 [Synechococcus elongatus PCC 6301]
MRKLAWTNEAWEDYLYWQGQDKKTLNRINKLITETLRSPFEGIGKPEALRENLTGFWSRRIDDTNRLVYAVADDYLTIIS
CRYHYSD
MRKLAWTNEAWEDYLYWQGQDKKTLNRINKLITETLRSPFEGIGKPEALRENLTGFWSRRIDDTNRLVYAVADDYLTIIS
CRYHYSD
Download Length: 264 bp
>T221299 NZ_CP117373:358262-358537 [Salmonella enterica subsp. enterica serovar Dublin]
ATGGGGCAAAGGGAAATTGAATATTCGGGACAGTTCCAGAAAGATGTAAAACGGGCACAAAAGCGTCATAAGGATGTCGG
CAAACTTAAAACACTTATGACGCTTCTGATTCACCACCCTTTTCCCCTTCCTGCCATTTATAAAGATCACCCGTTACAAG
GTTCATATAGCGGATACCGGGATGCCCATATTGAGCCTGACTGGATTCTTATTTATAAGATAACGGATGAATGCCTGCGA
TTTGAACGAACAGGAACGCATGCCGATTTATTTTAA
ATGGGGCAAAGGGAAATTGAATATTCGGGACAGTTCCAGAAAGATGTAAAACGGGCACAAAAGCGTCATAAGGATGTCGG
CAAACTTAAAACACTTATGACGCTTCTGATTCACCACCCTTTTCCCCTTCCTGCCATTTATAAAGATCACCCGTTACAAG
GTTCATATAGCGGATACCGGGATGCCCATATTGAGCCTGACTGGATTCTTATTTATAAGATAACGGATGAATGCCTGCGA
TTTGAACGAACAGGAACGCATGCCGATTTATTTTAA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9478.72 Da Isoelectric Point: 5.6400
>AT221299 WP_011242656.1 NZ_CP085785:c1234332-1234078 [Synechococcus elongatus PCC 6301]
MKVVSFSDARKNLKTVLDEVVNDADYTIITRRNAEEVVVMSLDSFNSLIETFHLLKSPANAAHLQRSIAQYQQGQTVERN
LLDA
MKVVSFSDARKNLKTVLDEVVNDADYTIITRRNAEEVVVMSLDSFNSLIETFHLLKSPANAAHLQRSIAQYQQGQTVERN
LLDA
Download Length: 255 bp
>AT221299 NZ_CP117373:357999-358259 [Salmonella enterica subsp. enterica serovar Dublin]
ATGGCTGCAAATGCGCTTGTTCGTGCCCGTATCGACGAAACGCTGAAGGACCAGGCGGCAGATGTCCTGGCTGAAATGGG
GTTAACCATTTCTGATTTGATACGGATTACACTGACTAAAGTTGCGCGTGAAAAGGCATTGCCTTTTGATTTGCGCATAC
CCAATGAGTTAACGTCACGAACGATAGAAAATAGCGAAGCTGGCGTTGATATTCATAAAGCCAAAGATGCTGATGATTTG
TTTGACCAGTTAGGGATCTGA
ATGGCTGCAAATGCGCTTGTTCGTGCCCGTATCGACGAAACGCTGAAGGACCAGGCGGCAGATGTCCTGGCTGAAATGGG
GTTAACCATTTCTGATTTGATACGGATTACACTGACTAAAGTTGCGCGTGAAAAGGCATTGCCTTTTGATTTGCGCATAC
CCAATGAGTTAACGTCACGAACGATAGAAAATAGCGAAGCTGGCGTTGATATTCATAAAGCCAAAGATGCTGATGATTTG
TTTGACCAGTTAGGGATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|