Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4663806..4664007 | Replicon | chromosome |
| Accession | NZ_CP085767 | ||
| Organism | Enterobacter hormaechei strain 49589CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4663811..4663914 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4663806..4664007 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU37_RS22290 (LJU37_22290) | 4660066..4661514 | + | 1449 | WP_196362492.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJU37_RS22295 (LJU37_22295) | 4661621..4661860 | + | 240 | WP_006811010.1 | YebV family protein | - |
| LJU37_RS22300 (LJU37_22300) | 4661895..4662539 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| LJU37_RS22305 (LJU37_22305) | 4662707..4663687 | + | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| LJU37_RS22310 (LJU37_22310) | 4663733..4663930 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 4663806..4664007 | + | 202 | - | - | Antitoxin |
| - | 4663811..4663914 | - | 104 | - | - | Toxin |
| LJU37_RS22315 (LJU37_22315) | 4664055..4664393 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LJU37_RS22320 (LJU37_22320) | 4664410..4665256 | - | 847 | Protein_4341 | copper homeostasis membrane protein CopD | - |
| LJU37_RS22325 (LJU37_22325) | 4665258..4665629 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| LJU37_RS22330 (LJU37_22330) | 4665767..4665997 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LJU37_RS22335 (LJU37_22335) | 4666109..4666759 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| LJU37_RS22340 (LJU37_22340) | 4666784..4667446 | + | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221257 NZ_CP085767:c4663914-4663811 [Enterobacter hormaechei]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT221257 NZ_CP085767:4663806-4664007 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
