Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 943846..944045 | Replicon | chromosome |
| Accession | NZ_CP085757 | ||
| Organism | Enterobacter hormaechei strain 54569CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 943849..943952 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 943846..944045 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU41_RS04625 (LJU41_04625) | 940110..941552 | + | 1443 | WP_072199618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJU41_RS04630 (LJU41_04630) | 941659..941898 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LJU41_RS04635 (LJU41_04635) | 941933..942577 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| LJU41_RS04640 (LJU41_04640) | 942745..943725 | + | 981 | WP_060580043.1 | VirK/YbjX family protein | - |
| LJU41_RS04645 (LJU41_04645) | 943771..943968 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 943846..944045 | + | 200 | - | - | Antitoxin |
| - | 943849..943952 | - | 104 | - | - | Toxin |
| LJU41_RS04650 (LJU41_04650) | 944094..944432 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LJU41_RS04655 (LJU41_04655) | 944449..945318 | - | 870 | WP_045329843.1 | copper homeostasis membrane protein CopD | - |
| LJU41_RS04660 (LJU41_04660) | 945320..945691 | - | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| LJU41_RS04665 (LJU41_04665) | 945829..946059 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LJU41_RS04670 (LJU41_04670) | 946171..946821 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LJU41_RS04675 (LJU41_04675) | 946846..947508 | + | 663 | WP_047354224.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221225 NZ_CP085757:c943952-943849 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT221225 NZ_CP085757:943846-944045 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
