Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 29187..29386 | Replicon | chromosome |
| Accession | NZ_CP085743 | ||
| Organism | Enterobacter hormaechei strain 60214CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 29280..29383 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 29187..29386 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU47_RS00130 (LJU47_00130) | 25723..26385 | - | 663 | WP_047354224.1 | exodeoxyribonuclease X | - |
| LJU47_RS00135 (LJU47_00135) | 26410..27060 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LJU47_RS00140 (LJU47_00140) | 27172..27402 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LJU47_RS00145 (LJU47_00145) | 27540..27911 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| LJU47_RS00150 (LJU47_00150) | 27913..28782 | + | 870 | WP_045329843.1 | copper homeostasis membrane protein CopD | - |
| LJU47_RS00155 (LJU47_00155) | 28799..29137 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 29187..29386 | - | 200 | - | - | Antitoxin |
| LJU47_RS00160 (LJU47_00160) | 29264..29461 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 29280..29383 | + | 104 | - | - | Toxin |
| LJU47_RS00165 (LJU47_00165) | 29507..30487 | - | 981 | WP_060580043.1 | VirK/YbjX family protein | - |
| LJU47_RS00170 (LJU47_00170) | 30655..31299 | + | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| LJU47_RS00175 (LJU47_00175) | 31334..31573 | - | 240 | WP_003859885.1 | YebV family protein | - |
| LJU47_RS00180 (LJU47_00180) | 31680..33122 | - | 1443 | WP_072199618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T221164 NZ_CP085743:29280-29383 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT221164 NZ_CP085743:c29386-29187 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
