Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1400724..1400869 | Replicon | chromosome |
| Accession | NZ_CP085729 | ||
| Organism | Klebsiella pneumoniae strain 59062CZ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1400731..1400833 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1400724..1400869 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJU45_RS07255 (LJU45_07255) | 1396256..1397689 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJU45_RS07260 (LJU45_07260) | 1397805..1398044 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LJU45_RS07265 (LJU45_07265) | 1398142..1398333 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LJU45_RS07270 (LJU45_07270) | 1398330..1398983 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LJU45_RS07275 (LJU45_07275) | 1399140..1400108 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LJU45_RS07280 (LJU45_07280) | 1400213..1400356 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1400724..1400869 | + | 146 | - | - | Antitoxin |
| - | 1400731..1400833 | - | 103 | - | - | Toxin |
| LJU45_RS07285 (LJU45_07285) | 1400992..1401330 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LJU45_RS07290 (LJU45_07290) | 1401347..1402216 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LJU45_RS07295 (LJU45_07295) | 1402220..1402594 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LJU45_RS07300 (LJU45_07300) | 1402707..1402937 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LJU45_RS07305 (LJU45_07305) | 1403016..1403675 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LJU45_RS07310 (LJU45_07310) | 1403679..1405739 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T221124 NZ_CP085729:c1400833-1400731 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT221124 NZ_CP085729:1400724-1400869 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
