Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020002..2020273 | Replicon | chromosome |
| Accession | NZ_CP085622 | ||
| Organism | Escherichia coli strain EC71 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020132..2020235 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020002..2020273 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJN53_RS09775 | 2016557..2017219 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LJN53_RS09780 | 2017243..2017899 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LJN53_RS09785 | 2018001..2018231 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LJN53_RS09790 | 2018370..2018744 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LJN53_RS09795 | 2018748..2019620 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| LJN53_RS09800 | 2019633..2019974 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2020002..2020273 | - | 272 | - | - | Antitoxin |
| - | 2020132..2020235 | + | 104 | - | - | Toxin |
| LJN53_RS09805 | 2020370..2021026 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LJN53_RS09810 | 2021027..2021218 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LJN53_RS09815 | 2021323..2021559 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LJN53_RS09820 | 2021677..2023116 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T220943 NZ_CP085622:2020132-2020235 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT220943 NZ_CP085622:c2020273-2020002 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
