Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4126559..4126704 | Replicon | chromosome |
| Accession | NZ_CP084823 | ||
| Organism | Klebsiella pneumoniae strain T69 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4126566..4126668 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4126559..4126704 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM19_RS20100 | 4122091..4123524 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LGM19_RS20105 | 4123640..4123879 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LGM19_RS20110 | 4123977..4124168 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LGM19_RS20115 | 4124165..4124818 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| LGM19_RS20120 | 4124975..4125943 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LGM19_RS20125 | 4126048..4126191 | + | 144 | WP_032458836.1 | Ecr family regulatory small membrane protein | - |
| - | 4126559..4126704 | + | 146 | - | - | Antitoxin |
| - | 4126566..4126668 | - | 103 | - | - | Toxin |
| LGM19_RS20130 | 4126827..4127165 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LGM19_RS20135 | 4127182..4128051 | - | 870 | WP_004899136.1 | copper homeostasis membrane protein CopD | - |
| LGM19_RS20140 | 4128055..4128429 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LGM19_RS20145 | 4128542..4128772 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LGM19_RS20150 | 4128851..4129510 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LGM19_RS20155 | 4129514..4131574 | - | 2061 | WP_004899137.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T219463 NZ_CP084823:c4126668-4126566 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT219463 NZ_CP084823:4126559-4126704 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
