Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2129548..2129691 Replicon chromosome
Accession NZ_CP084664
Organism UNVERIFIED_ORG: Hafnia paralvei strain FDAARGOS_1502

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2129586..2129689 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2129548..2129691 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LA328_RS10035 (LA328_10035) 2125335..2126579 + 1245 WP_008813592.1 membrane integrity lipid transport subunit YebS -
LA328_RS10040 (LA328_10040) 2126548..2129178 + 2631 WP_039186620.1 PqiB family protein -
- 2129548..2129691 - 144 - - Antitoxin
- 2129586..2129689 + 104 - - Toxin
LA328_RS10045 (LA328_10045) 2130098..2130646 + 549 WP_175319891.1 GNAT family N-acetyltransferase -
LA328_RS10050 (LA328_10050) 2130670..2131311 + 642 WP_175319890.1 Vat family streptogramin A O-acetyltransferase -
LA328_RS10055 (LA328_10055) 2131524..2132456 - 933 WP_008813600.1 Dyp-type peroxidase -
LA328_RS10060 (LA328_10060) 2133087..2134235 + 1149 WP_174705398.1 autotransporter domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T219119 NZ_CP084664:2129586-2129689 [Hafnia paralvei]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCTGATAC
AGGAGTCGTATCAGGTCTTTTTTT

Antitoxin


Download         Length: 144 bp

>AT219119 NZ_CP084664:c2129691-2129548 [Hafnia paralvei]
ATAAAAAAAGACCTGATACGACTCCTGTATCAGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTGGATTGCCTTGCTATTTAATAGTAGTCGACGATGCTTTTTTTTCCAGTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References