Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2099469..2099615 | Replicon | chromosome |
| Accession | NZ_CP084648 | ||
| Organism | Yersinia ruckeri strain 17Y0155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2099473..2099566 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2099469..2099615 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL92_RS09495 (LGL92_09515) | 2095262..2095891 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LGL92_RS09500 (LGL92_09520) | 2096116..2096784 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| LGL92_RS09505 (LGL92_09525) | 2097525..2098670 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| LGL92_RS09510 (LGL92_09530) | 2098789..2099397 | + | 609 | WP_004721720.1 | tyrosine-type recombinase/integrase | - |
| - | 2099469..2099615 | + | 147 | - | - | Antitoxin |
| - | 2099473..2099566 | - | 94 | - | - | Toxin |
| LGL92_RS09515 (LGL92_09535) | 2099725..2100066 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LGL92_RS09520 (LGL92_09540) | 2100161..2101045 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LGL92_RS09525 (LGL92_09545) | 2101047..2101433 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LGL92_RS09530 (LGL92_09550) | 2101838..2102353 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LGL92_RS09535 (LGL92_09555) | 2102756..2102986 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LGL92_RS09540 (LGL92_09560) | 2103109..2104059 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T219012 NZ_CP084648:c2099566-2099473 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT219012 NZ_CP084648:2099469-2099615 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
