Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1570253..1570399 | Replicon | chromosome |
| Accession | NZ_CP084642 | ||
| Organism | Yersinia ruckeri strain 17Y0161 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1570302..1570395 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1570253..1570399 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL90_RS07275 (LGL90_07295) | 1565809..1566759 | + | 951 | WP_145497409.1 | prolyl aminopeptidase | - |
| LGL90_RS07280 (LGL90_07300) | 1566882..1567112 | - | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LGL90_RS07285 (LGL90_07305) | 1567515..1568030 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| LGL90_RS07290 (LGL90_07310) | 1568435..1568821 | + | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LGL90_RS07295 (LGL90_07315) | 1568823..1569707 | + | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LGL90_RS07300 (LGL90_07320) | 1569802..1570143 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 1570253..1570399 | - | 147 | - | - | Antitoxin |
| - | 1570302..1570395 | + | 94 | - | - | Toxin |
| LGL90_RS07305 (LGL90_07325) | 1570472..1571119 | - | 648 | WP_234049330.1 | tyrosine-type recombinase/integrase | - |
| LGL90_RS07310 (LGL90_07330) | 1571196..1572341 | - | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| LGL90_RS07315 (LGL90_07335) | 1573082..1573768 | - | 687 | WP_004721715.1 | hypothetical protein | - |
| LGL90_RS07320 (LGL90_07340) | 1573975..1574604 | - | 630 | WP_004721714.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T218961 NZ_CP084642:1570302-1570395 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT218961 NZ_CP084642:c1570399-1570253 [Yersinia ruckeri]
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
