Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1614086..1614234 | Replicon | chromosome |
| Accession | NZ_CP084641 | ||
| Organism | Yersinia ruckeri strain 17Y0163 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1614135..1614228 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1614086..1614234 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGL88_RS07420 (LGL88_07440) | 1609643..1610593 | + | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
| LGL88_RS07425 (LGL88_07445) | 1610716..1610946 | - | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LGL88_RS07430 (LGL88_07450) | 1611349..1611864 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| LGL88_RS07435 (LGL88_07455) | 1612268..1612654 | + | 387 | WP_234055787.1 | CopC domain-containing protein YobA | - |
| LGL88_RS07440 (LGL88_07460) | 1612656..1613540 | + | 885 | WP_045844133.1 | copper homeostasis membrane protein CopD | - |
| LGL88_RS07445 (LGL88_07465) | 1613635..1613976 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 1614086..1614234 | - | 149 | - | - | Antitoxin |
| - | 1614135..1614228 | + | 94 | - | - | Toxin |
| LGL88_RS07450 (LGL88_07470) | 1614271..1615356 | - | 1086 | WP_186368419.1 | tyrosine-type recombinase/integrase | - |
| LGL88_RS07455 (LGL88_07475) | 1615522..1615740 | - | 219 | WP_045844132.1 | DNA-binding transcriptional regulator | - |
| LGL88_RS07460 (LGL88_07480) | 1615834..1617000 | - | 1167 | WP_045844131.1 | phage late control D family protein | - |
| LGL88_RS07465 (LGL88_07485) | 1616997..1617482 | - | 486 | WP_049689779.1 | phage tail protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1608114..1646379 | 38265 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T218947 NZ_CP084641:1614135-1614228 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT218947 NZ_CP084641:c1614234-1614086 [Yersinia ruckeri]
ACAAATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGT
TGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
ACAAATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGT
TGGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
