Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1710063..1710158 | Replicon | chromosome |
| Accession | NZ_CP084433 | ||
| Organism | Edwardsiella piscicida strain S07-534 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1710070..1710158 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1710063..1710158 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DCF40_RS07870 (DCF40_07870) | 1705667..1706881 | - | 1215 | WP_071890384.1 | DUF1028 domain-containing protein | - |
| DCF40_RS07875 (DCF40_07875) | 1707934..1708230 | - | 297 | WP_012848441.1 | putative quinol monooxygenase | - |
| DCF40_RS07880 (DCF40_07880) | 1708272..1708667 | - | 396 | WP_015461418.1 | VOC family protein | - |
| DCF40_RS07885 (DCF40_07885) | 1708887..1709168 | - | 282 | WP_015461419.1 | ribbon-helix-helix domain-containing protein | - |
| DCF40_RS07890 (DCF40_07890) | 1709448..1709852 | - | 405 | WP_226088389.1 | tyrosine-type recombinase/integrase | - |
| - | 1710063..1710158 | - | 96 | - | - | Antitoxin |
| - | 1710070..1710158 | + | 89 | - | - | Toxin |
| DCF40_RS07895 (DCF40_07895) | 1710197..1711291 | - | 1095 | WP_069578521.1 | tyrosine-type recombinase/integrase | - |
| DCF40_RS07900 (DCF40_07900) | 1711278..1711526 | - | 249 | WP_015871361.1 | excisionase | - |
| DCF40_RS07905 (DCF40_07905) | 1711626..1711904 | + | 279 | WP_069578523.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DCF40_RS07910 (DCF40_07910) | 1711904..1712191 | + | 288 | WP_069578525.1 | HigA family addiction module antitoxin | - |
| DCF40_RS07915 (DCF40_07915) | 1712274..1712933 | - | 660 | WP_071890273.1 | hypothetical protein | - |
| DCF40_RS07920 (DCF40_07920) | 1713443..1714201 | - | 759 | WP_069578527.1 | antA/AntB antirepressor family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1695641..1774137 | 78496 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 bp
>T218614 NZ_CP084433:1710070-1710158 [Edwardsiella piscicida]
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGT
GCAAGGCACTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCAAAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGT
Antitoxin
Download Length: 96 bp
>AT218614 NZ_CP084433:c1710158-1710063 [Edwardsiella piscicida]
ACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCATTATGCAGGCATTGA
GTGCCTTGCTCTATAA
ACACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTTTGGAGAGCCGTGCGCTAAAAGTTGGCATTATGCAGGCATTGA
GTGCCTTGCTCTATAA
