Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2039813..2039958 | Replicon | chromosome |
| Accession | NZ_CP083932 | ||
| Organism | Klebsiella pneumoniae strain BA4946 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2039849..2039951 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2039813..2039958 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH45_RS09910 | 2034943..2037003 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LCH45_RS09915 | 2037007..2037666 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| LCH45_RS09920 | 2037745..2037975 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LCH45_RS09925 | 2038088..2038462 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LCH45_RS09930 | 2038466..2039335 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| LCH45_RS09935 | 2039352..2039690 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2039813..2039958 | - | 146 | - | - | Antitoxin |
| - | 2039849..2039951 | + | 103 | - | - | Toxin |
| LCH45_RS09940 | 2040327..2040470 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LCH45_RS09945 | 2040575..2041543 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LCH45_RS09950 | 2041700..2042353 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LCH45_RS09955 | 2042350..2042541 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LCH45_RS09960 | 2042639..2042878 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LCH45_RS09965 | 2042994..2044427 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T217810 NZ_CP083932:2039849-2039951 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT217810 NZ_CP083932:c2039958-2039813 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
