Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1758839..1758984 | Replicon | chromosome |
| Accession | NZ_CP083768 | ||
| Organism | Klebsiella pneumoniae strain KSB1_9E isolate KSB1_9E | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1758875..1758977 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1758839..1758984 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LB480_RS08520 | 1753969..1756029 | + | 2061 | WP_060415693.1 | oligopeptidase B | - |
| LB480_RS08525 | 1756033..1756692 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LB480_RS08530 | 1756771..1757001 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LB480_RS08535 | 1757114..1757488 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LB480_RS08540 | 1757492..1758361 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| LB480_RS08545 | 1758378..1758716 | + | 339 | WP_048982383.1 | YebY family protein | - |
| - | 1758839..1758984 | - | 146 | - | - | Antitoxin |
| - | 1758875..1758977 | + | 103 | - | - | Toxin |
| LB480_RS08550 | 1759353..1759496 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LB480_RS08555 | 1759601..1760569 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LB480_RS08560 | 1760726..1761379 | + | 654 | WP_060415692.1 | protein-serine/threonine phosphatase | - |
| LB480_RS08565 | 1761376..1761567 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LB480_RS08570 | 1761665..1761904 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LB480_RS08575 | 1762020..1763453 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T217272 NZ_CP083768:1758875-1758977 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT217272 NZ_CP083768:c1758984-1758839 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
