Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 744785..745056 | Replicon | chromosome |
| Accession | NZ_CP083701 | ||
| Organism | Escherichia coli strain SUISSEKPC3NDM5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 744915..745018 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 744785..745056 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9O95_RS03755 | 741340..742002 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K9O95_RS03760 | 742026..742682 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K9O95_RS03765 | 742784..743014 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K9O95_RS03770 | 743153..743527 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K9O95_RS03775 | 743531..744403 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| K9O95_RS03780 | 744416..744757 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 744785..745056 | - | 272 | - | - | Antitoxin |
| - | 744915..745018 | + | 104 | - | - | Toxin |
| K9O95_RS03785 | 745153..745809 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| K9O95_RS03790 | 745810..746001 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K9O95_RS03795 | 746106..746342 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K9O95_RS03800 | 746460..747899 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 673426..761671 | 88245 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T217095 NZ_CP083701:744915-745018 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT217095 NZ_CP083701:c745056-744785 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
