Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 549031..549171 | Replicon | chromosome |
| Accession | NZ_CP083690 | ||
| Organism | Serratia sp. HRI | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 549031..549127 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 549031..549171 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GF111_RS02670 (GF111_02670) | 544115..544363 | - | 249 | WP_165698098.1 | helix-turn-helix transcriptional regulator | - |
| GF111_RS02675 (GF111_02675) | 544338..544901 | - | 564 | WP_033642723.1 | DUF2975 domain-containing protein | - |
| GF111_RS02680 (GF111_02680) | 545060..546259 | - | 1200 | WP_055312137.1 | trans-2-enoyl-CoA reductase family protein | - |
| GF111_RS02685 (GF111_02685) | 546546..546848 | + | 303 | WP_047727769.1 | hypothetical protein | - |
| GF111_RS02690 (GF111_02690) | 546899..547249 | - | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| GF111_RS02695 (GF111_02695) | 547865..548287 | + | 423 | Protein_534 | hypothetical protein | - |
| GF111_RS02700 (GF111_02700) | 548281..548610 | + | 330 | WP_038875697.1 | DUF1493 family protein | - |
| - | 549031..549127 | - | 97 | - | - | Toxin |
| - | 549031..549171 | + | 141 | - | - | Antitoxin |
| GF111_RS02705 (GF111_02705) | 549269..549610 | - | 342 | WP_025302452.1 | YebY family protein | - |
| GF111_RS02710 (GF111_02710) | 549680..550561 | - | 882 | WP_147191661.1 | copper homeostasis membrane protein CopD | - |
| GF111_RS02715 (GF111_02715) | 550564..550947 | - | 384 | WP_038875845.1 | CopC domain-containing protein YobA | - |
| GF111_RS02720 (GF111_02720) | 551272..551790 | - | 519 | WP_038875847.1 | non-heme ferritin | - |
| GF111_RS02725 (GF111_02725) | 552131..552361 | + | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| GF111_RS02730 (GF111_02730) | 552396..553349 | - | 954 | WP_038875880.1 | prolyl aminopeptidase | - |
| GF111_RS02735 (GF111_02735) | 553544..553969 | - | 426 | WP_080491292.1 | RNA polymerase-binding protein DksA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T217068 NZ_CP083690:c549127-549031 [Serratia sp. HRI]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT217068 NZ_CP083690:549031-549171 [Serratia sp. HRI]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCTCTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCTCTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
