Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 792994..793262 | Replicon | chromosome |
| Accession | NZ_CP083512 | ||
| Organism | Escherichia coli strain elppa4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 793032..793135 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 792994..793262 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U07_RS04035 | 790151..791590 | + | 1440 | WP_024186572.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K9U07_RS04040 | 791708..791944 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K9U07_RS04045 | 792049..792240 | + | 192 | WP_001296140.1 | YebW family protein | - |
| K9U07_RS04050 | 792241..792897 | - | 657 | WP_001559255.1 | protein-serine/threonine phosphatase | - |
| - | 792994..793262 | + | 269 | - | - | Antitoxin |
| - | 793032..793135 | - | 104 | - | - | Toxin |
| K9U07_RS04055 | 793292..793633 | - | 342 | WP_000976485.1 | YebY family protein | - |
| K9U07_RS04060 | 793646..794518 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| K9U07_RS04065 | 794522..794896 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K9U07_RS04070 | 795035..795265 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K9U07_RS04075 | 795367..796023 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K9U07_RS04080 | 796047..796709 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 784764..817044 | 32280 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216681 NZ_CP083512:c793135-793032 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT216681 NZ_CP083512:792994-793262 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
