Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 300120..300391 | Replicon | chromosome |
| Accession | NZ_CP083497 | ||
| Organism | Escherichia coli strain elppa6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 300250..300353 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 300120..300391 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U09_RS01470 | 296675..297337 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K9U09_RS01475 | 297361..298017 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K9U09_RS01480 | 298119..298349 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K9U09_RS01485 | 298488..298862 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| K9U09_RS01490 | 298866..299738 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| K9U09_RS01495 | 299751..300092 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 300120..300391 | - | 272 | - | - | Antitoxin |
| - | 300250..300353 | + | 104 | - | - | Toxin |
| K9U09_RS01500 | 300488..301144 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K9U09_RS01505 | 301145..301336 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K9U09_RS01510 | 301441..301677 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K9U09_RS01515 | 301795..303234 | - | 1440 | WP_228596708.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216598 NZ_CP083497:300250-300353 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216598 NZ_CP083497:c300391-300120 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
