Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 817613..817884 | Replicon | chromosome |
| Accession | NZ_CP083492 | ||
| Organism | Escherichia coli strain elppa8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 817743..817846 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 817613..817884 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U11_RS03810 | 814168..814830 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K9U11_RS03815 | 814854..815510 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K9U11_RS03820 | 815612..815842 | - | 231 | WP_197344346.1 | DNA polymerase III subunit theta | - |
| K9U11_RS03825 | 815981..816355 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K9U11_RS03830 | 816359..817231 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| K9U11_RS03835 | 817244..817585 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 817613..817884 | - | 272 | - | - | Antitoxin |
| - | 817743..817846 | + | 104 | - | - | Toxin |
| K9U11_RS03840 | 817981..818637 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K9U11_RS03845 | 818638..818829 | - | 192 | WP_000457842.1 | YebW family protein | - |
| K9U11_RS03850 | 818934..819170 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K9U11_RS03855 | 819288..820727 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T216561 NZ_CP083492:817743-817846 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT216561 NZ_CP083492:c817884-817613 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
