Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1835166..1835311 | Replicon | chromosome |
| Accession | NZ_CP083032 | ||
| Organism | Klebsiella pneumoniae strain 5208.51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1835202..1835304 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1835166..1835311 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9F36_RS08960 | 1830296..1832356 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K9F36_RS08965 | 1832360..1833019 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K9F36_RS08970 | 1833098..1833328 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K9F36_RS08975 | 1833441..1833815 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K9F36_RS08980 | 1833819..1834688 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| K9F36_RS08985 | 1834705..1835043 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1835166..1835311 | - | 146 | - | - | Antitoxin |
| - | 1835202..1835304 | + | 103 | - | - | Toxin |
| K9F36_RS08990 | 1835680..1835823 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K9F36_RS08995 | 1835928..1836896 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K9F36_RS09000 | 1837053..1837706 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| K9F36_RS09005 | 1837703..1837894 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K9F36_RS09010 | 1837992..1838231 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K9F36_RS09015 | 1838347..1839780 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215949 NZ_CP083032:1835202-1835304 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT215949 NZ_CP083032:c1835311-1835166 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
