Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2063032..2063182 | Replicon | chromosome |
| Accession | NZ_CP082954 | ||
| Organism | Salmonella enterica subsp. arizonae strain S499 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2063070..2063173 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2063032..2063182 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8I78_RS09865 | 2059459..2060154 | - | 696 | WP_023246231.1 | exodeoxyribonuclease X | - |
| K8I78_RS09870 | 2060178..2060834 | - | 657 | WP_023246230.1 | carbon-nitrogen hydrolase family protein | - |
| K8I78_RS09875 | 2060941..2061171 | - | 231 | WP_023246229.1 | DNA polymerase III subunit theta | - |
| K8I78_RS09880 | 2061309..2061683 | + | 375 | WP_053528957.1 | CopC domain-containing protein YobA | - |
| K8I78_RS09885 | 2061684..2062559 | + | 876 | WP_072162011.1 | copper homeostasis membrane protein CopD | - |
| K8I78_RS09890 | 2062576..2062926 | + | 351 | WP_053528958.1 | YebY family protein | - |
| - | 2063032..2063182 | - | 151 | - | - | Antitoxin |
| - | 2063070..2063173 | + | 104 | - | - | Toxin |
| K8I78_RS09895 | 2063289..2063384 | - | 96 | Protein_1933 | integrase | - |
| K8I78_RS09900 | 2063897..2064361 | + | 465 | WP_053528959.1 | helix-turn-helix transcriptional regulator | - |
| K8I78_RS09905 | 2064821..2065270 | - | 450 | WP_023245926.1 | hypothetical protein | - |
| K8I78_RS09910 | 2066240..2066452 | + | 213 | WP_053529090.1 | phage holin | - |
| K8I78_RS09915 | 2066433..2066783 | + | 351 | Protein_1937 | lysozyme | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | cdtB / sopE2 | 2055692..2107612 | 51920 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T215692 NZ_CP082954:2063070-2063173 [Salmonella enterica subsp. arizonae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT215692 NZ_CP082954:c2063182-2063032 [Salmonella enterica subsp. arizonae]
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
