Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977203..1977349 | Replicon | chromosome |
| Accession | NZ_CP082898 | ||
| Organism | Klebsiella aerogenes strain KAE3SP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977238..1977341 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977203..1977349 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6006_RS09245 (K6006_09245) | 1972312..1974372 | + | 2061 | WP_032708611.1 | oligopeptidase B | - |
| K6006_RS09250 (K6006_09250) | 1974375..1975034 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| K6006_RS09255 (K6006_09255) | 1975114..1975344 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| K6006_RS09260 (K6006_09260) | 1975479..1975853 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| K6006_RS09265 (K6006_09265) | 1975857..1976726 | + | 870 | WP_032708610.1 | copper homeostasis membrane protein CopD | - |
| K6006_RS09270 (K6006_09270) | 1976740..1977081 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1977203..1977349 | - | 147 | - | - | Antitoxin |
| - | 1977238..1977341 | + | 104 | - | - | Toxin |
| K6006_RS09275 (K6006_09275) | 1977469..1978416 | - | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| K6006_RS09280 (K6006_09280) | 1978435..1980759 | - | 2325 | WP_032708542.1 | fimbria/pilus outer membrane usher protein | - |
| K6006_RS09285 (K6006_09285) | 1980762..1981511 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| K6006_RS09290 (K6006_09290) | 1981529..1982047 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T215505 NZ_CP082898:1977238-1977341 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT215505 NZ_CP082898:c1977349-1977203 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
