Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2003038..2003164 | Replicon | chromosome |
| Accession | NZ_CP082787 | ||
| Organism | Serratia entomophila strain A1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2003060..2003156 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2003038..2003164 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHA73_RS09775 (KHA73_09785) | 1998402..1999694 | + | 1293 | WP_234590576.1 | SLC13 family permease | - |
| KHA73_RS09780 (KHA73_09790) | 1999810..2000040 | - | 231 | WP_234590577.1 | DNA polymerase III subunit theta | - |
| KHA73_RS09785 (KHA73_09795) | 2000405..2000923 | + | 519 | WP_234590578.1 | non-heme ferritin | - |
| KHA73_RS09790 (KHA73_09800) | 2001251..2001634 | + | 384 | WP_234590579.1 | CopC domain-containing protein YobA | - |
| KHA73_RS09795 (KHA73_09805) | 2001638..2002519 | + | 882 | WP_234590580.1 | copper homeostasis membrane protein CopD | - |
| KHA73_RS09800 (KHA73_09810) | 2002589..2002930 | + | 342 | WP_234590581.1 | YebY family protein | - |
| - | 2003038..2003164 | - | 127 | - | - | Antitoxin |
| - | 2003060..2003156 | + | 97 | - | - | Toxin |
| KHA73_RS09805 (KHA73_09815) | 2003235..2004317 | - | 1083 | WP_234590582.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| KHA73_RS09810 (KHA73_09820) | 2004292..2004567 | - | 276 | WP_234590583.1 | excisionase | - |
| KHA73_RS09815 (KHA73_09825) | 2004644..2005147 | - | 504 | WP_234590584.1 | siphovirus Gp157 family protein | - |
| KHA73_RS09820 (KHA73_09830) | 2005144..2006004 | - | 861 | WP_234590585.1 | hypothetical protein | - |
| KHA73_RS09825 | 2006023..2006268 | + | 246 | Protein_1906 | endopeptidase | - |
| KHA73_RS09830 (KHA73_09835) | 2006365..2006682 | + | 318 | WP_234591393.1 | hypothetical protein | - |
| KHA73_RS09835 (KHA73_09840) | 2006881..2007111 | + | 231 | WP_234590586.1 | hypothetical protein | - |
| KHA73_RS09840 (KHA73_09845) | 2007108..2007734 | + | 627 | WP_234590587.1 | HNH endonuclease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1998402..2024489 | 26087 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T215042 NZ_CP082787:2003060-2003156 [Serratia entomophila]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 127 bp
>AT215042 NZ_CP082787:c2003164-2003038 [Serratia entomophila]
AACTAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
AACTAGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
