Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689099..2689367 | Replicon | chromosome |
| Accession | NZ_CP082771 | ||
| Organism | Escherichia coli LF82 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689137..2689239 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689099..2689367 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B90_RS13175 | 2686256..2687695 | + | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K8B90_RS13180 | 2687813..2688049 | + | 237 | WP_001295499.1 | YebV family protein | - |
| K8B90_RS13185 | 2688154..2688345 | + | 192 | WP_001317886.1 | YebW family protein | - |
| K8B90_RS13190 | 2688346..2689002 | - | 657 | WP_000812746.1 | protein-serine/threonine phosphatase | - |
| - | 2689099..2689367 | + | 269 | - | - | Antitoxin |
| - | 2689137..2689239 | - | 103 | - | - | Toxin |
| K8B90_RS13195 | 2689397..2689738 | - | 342 | WP_000976472.1 | YebY family protein | - |
| K8B90_RS13200 | 2689751..2690623 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| K8B90_RS13205 | 2690627..2691001 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K8B90_RS13210 | 2691140..2691370 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K8B90_RS13215 | 2691472..2692128 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K8B90_RS13220 | 2692151..2692813 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T214839 NZ_CP082771:c2689239-2689137 [Escherichia coli LF82]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT214839 NZ_CP082771:2689099-2689367 [Escherichia coli LF82]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
