Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2267332..2267500 | Replicon | chromosome |
| Accession | NZ_CP082360 | ||
| Organism | Klebsiella sp. CTHL.F3a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2267390..2267493 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2267332..2267500 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K7H21_RS10665 (K7H21_10665) | 2262459..2264519 | + | 2061 | WP_223035765.1 | oligopeptidase B | - |
| K7H21_RS10670 (K7H21_10670) | 2264526..2265185 | - | 660 | WP_004122030.1 | exodeoxyribonuclease X | - |
| K7H21_RS10675 (K7H21_10675) | 2265264..2265494 | - | 231 | WP_004122029.1 | DNA polymerase III subunit theta | - |
| K7H21_RS10680 (K7H21_10680) | 2265630..2266004 | + | 375 | WP_004122028.1 | CopC domain-containing protein YobA | - |
| K7H21_RS10685 (K7H21_10685) | 2266009..2266878 | + | 870 | WP_087828997.1 | copper homeostasis membrane protein CopD | - |
| K7H21_RS10690 (K7H21_10690) | 2266895..2267233 | + | 339 | WP_223035766.1 | YebY family protein | - |
| - | 2267332..2267500 | - | 169 | - | - | Antitoxin |
| - | 2267390..2267493 | + | 104 | - | - | Toxin |
| K7H21_RS10695 (K7H21_10695) | 2267618..2268577 | - | 960 | WP_049114593.1 | spore coat protein U domain-containing protein | - |
| K7H21_RS10700 (K7H21_10700) | 2268592..2270922 | - | 2331 | WP_223035767.1 | fimbria/pilus outer membrane usher protein | - |
| K7H21_RS10705 (K7H21_10705) | 2270925..2271689 | - | 765 | WP_123829169.1 | molecular chaperone | - |
| K7H21_RS10710 (K7H21_10710) | 2271708..2272226 | - | 519 | WP_004122022.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T214727 NZ_CP082360:2267390-2267493 [Klebsiella sp. CTHL.F3a]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT214727 NZ_CP082360:c2267500-2267332 [Klebsiella sp. CTHL.F3a]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
