Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2023369..2023637 | Replicon | chromosome |
| Accession | NZ_CP082357 | ||
| Organism | Escherichia coli strain VCSW7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2023496..2023599 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2023369..2023637 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K7X31_RS09435 | 2019922..2020584 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| K7X31_RS09440 | 2020608..2021264 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K7X31_RS09445 | 2021366..2021596 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K7X31_RS09450 | 2021735..2022109 | + | 375 | WP_223025071.1 | CopC domain-containing protein YobA | - |
| K7X31_RS09455 | 2022113..2022985 | + | 873 | WP_054495243.1 | copper homeostasis membrane protein CopD | - |
| K7X31_RS09460 | 2022998..2023339 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2023369..2023637 | - | 269 | - | - | Antitoxin |
| - | 2023496..2023599 | + | 104 | - | - | Toxin |
| K7X31_RS09465 | 2023734..2024390 | + | 657 | WP_223025072.1 | protein-serine/threonine phosphatase | - |
| K7X31_RS09470 | 2024391..2024582 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K7X31_RS09475 | 2024687..2024923 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K7X31_RS09480 | 2025041..2026480 | - | 1440 | WP_223025073.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T214699 NZ_CP082357:2023496-2023599 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT214699 NZ_CP082357:c2023637-2023369 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
