Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1897728..1897875 | Replicon | chromosome |
| Accession | NZ_CP081893 | ||
| Organism | Klebsiella quasipneumoniae strain WI-06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1897769..1897871 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1897728..1897875 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZ658_RS09225 | 1892863..1894923 | + | 2061 | WP_044523975.1 | oligopeptidase B | - |
| KZ658_RS09230 | 1894927..1895586 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| KZ658_RS09235 | 1895665..1895895 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KZ658_RS09240 | 1896008..1896382 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| KZ658_RS09245 | 1896386..1897255 | + | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| KZ658_RS09250 | 1897272..1897610 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1897728..1897875 | - | 148 | - | - | Antitoxin |
| - | 1897769..1897871 | + | 103 | - | - | Toxin |
| KZ658_RS09255 | 1898250..1898393 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| KZ658_RS09260 | 1898494..1899462 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| KZ658_RS09265 | 1899619..1900272 | + | 654 | WP_218799149.1 | protein-serine/threonine phosphatase | - |
| KZ658_RS09270 | 1900269..1900460 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KZ658_RS09275 | 1900558..1900797 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KZ658_RS09280 | 1900913..1902343 | - | 1431 | WP_049013974.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T213717 NZ_CP081893:1897769-1897871 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT213717 NZ_CP081893:c1897875-1897728 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
