Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2243199..2243470 | Replicon | chromosome |
| Accession | NZ_CP081782 | ||
| Organism | Escherichia coli strain 0H26 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2243329..2243432 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2243199..2243470 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6O44_RS11020 | 2239754..2240416 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J6O44_RS11025 | 2240440..2241096 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J6O44_RS11030 | 2241198..2241428 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J6O44_RS11035 | 2241567..2241941 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| J6O44_RS11040 | 2241945..2242817 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| J6O44_RS11045 | 2242830..2243171 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2243199..2243470 | - | 272 | - | - | Antitoxin |
| - | 2243329..2243432 | + | 104 | - | - | Toxin |
| J6O44_RS11050 | 2243567..2244223 | + | 657 | WP_000812740.1 | protein-serine/threonine phosphatase | - |
| J6O44_RS11055 | 2244224..2244415 | - | 192 | WP_001313035.1 | YebW family protein | - |
| J6O44_RS11060 | 2244520..2244756 | - | 237 | WP_001295499.1 | YebV family protein | - |
| J6O44_RS11065 | 2244874..2246313 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T213397 NZ_CP081782:2243329-2243432 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT213397 NZ_CP081782:c2243470-2243199 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
