Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162950..2163221 | Replicon | chromosome |
| Accession | NZ_CP081724 | ||
| Organism | Escherichia coli strain CX07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2163080..2163183 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162950..2163221 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6O12_RS10510 | 2159505..2160167 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J6O12_RS10515 | 2160191..2160847 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J6O12_RS10520 | 2160949..2161179 | - | 231 | WP_088765774.1 | DNA polymerase III subunit theta | - |
| J6O12_RS10525 | 2161318..2161692 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| J6O12_RS10530 | 2161696..2162568 | + | 873 | WP_088765773.1 | copper homeostasis membrane protein CopD | - |
| J6O12_RS10535 | 2162581..2162922 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2162950..2163221 | - | 272 | - | - | Antitoxin |
| - | 2163080..2163183 | + | 104 | - | - | Toxin |
| J6O12_RS10540 | 2163318..2163974 | + | 657 | WP_032281033.1 | protein-serine/threonine phosphatase | - |
| J6O12_RS10545 | 2163975..2164166 | - | 192 | WP_001296140.1 | YebW family protein | - |
| J6O12_RS10550 | 2164271..2164507 | - | 237 | WP_088765772.1 | YebV family protein | - |
| J6O12_RS10555 | 2164625..2166064 | - | 1440 | WP_088765914.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T213246 NZ_CP081724:2163080-2163183 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT213246 NZ_CP081724:c2163221-2162950 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
