Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2049220..2049491 | Replicon | chromosome |
| Accession | NZ_CP081698 | ||
| Organism | Escherichia coli strain CT02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2049350..2049453 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2049220..2049491 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6N91_RS09840 | 2045775..2046437 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| J6N91_RS09845 | 2046461..2047117 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| J6N91_RS09850 | 2047219..2047449 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| J6N91_RS09855 | 2047588..2047962 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| J6N91_RS09860 | 2047966..2048838 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| J6N91_RS09865 | 2048851..2049192 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2049220..2049491 | - | 272 | - | - | Antitoxin |
| - | 2049350..2049453 | + | 104 | - | - | Toxin |
| J6N91_RS09870 | 2049588..2050244 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| J6N91_RS09875 | 2050245..2050436 | - | 192 | WP_001338167.1 | YebW family protein | - |
| J6N91_RS09880 | 2050541..2050777 | - | 237 | WP_001338166.1 | YebV family protein | - |
| J6N91_RS09885 | 2050895..2052334 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T213070 NZ_CP081698:2049350-2049453 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT213070 NZ_CP081698:c2049491-2049220 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
