Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2007128..2007273 | Replicon | chromosome |
| Accession | NZ_CP080297 | ||
| Organism | Klebsiella pneumoniae strain KP-C76 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2007164..2007266 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2007128..2007273 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0E64_RS09825 (K0E64_09825) | 2002258..2004318 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| K0E64_RS09830 (K0E64_09830) | 2004322..2004981 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K0E64_RS09835 (K0E64_09835) | 2005060..2005290 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K0E64_RS09840 (K0E64_09840) | 2005403..2005777 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K0E64_RS09845 (K0E64_09845) | 2005781..2006650 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| K0E64_RS09850 (K0E64_09850) | 2006667..2007005 | + | 339 | WP_211589099.1 | YebY family protein | - |
| - | 2007128..2007273 | - | 146 | - | - | Antitoxin |
| - | 2007164..2007266 | + | 103 | - | - | Toxin |
| K0E64_RS09855 (K0E64_09855) | 2007641..2007784 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K0E64_RS09860 (K0E64_09860) | 2007889..2008857 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K0E64_RS09865 (K0E64_09865) | 2009014..2009667 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| K0E64_RS09870 (K0E64_09870) | 2009664..2009855 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K0E64_RS09875 (K0E64_09875) | 2009953..2010192 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K0E64_RS09880 (K0E64_09880) | 2010308..2011741 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T211619 NZ_CP080297:2007164-2007266 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT211619 NZ_CP080297:c2007273-2007128 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
