Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3630014..3630282 | Replicon | chromosome |
| Accession | NZ_CP080246 | ||
| Organism | Escherichia coli strain SYNB1934 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3630052..3630154 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3630014..3630282 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZX95_RS17380 | 3627171..3628610 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KZX95_RS17385 | 3628728..3628964 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KZX95_RS17390 | 3629069..3629260 | + | 192 | WP_001317886.1 | YebW family protein | - |
| KZX95_RS17395 | 3629261..3629917 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 3630014..3630282 | + | 269 | - | - | Antitoxin |
| - | 3630052..3630154 | - | 103 | - | - | Toxin |
| KZX95_RS17400 | 3630312..3630653 | - | 342 | WP_000984819.1 | YebY family protein | - |
| KZX95_RS17405 | 3630666..3631538 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| KZX95_RS17410 | 3631542..3631916 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KZX95_RS17415 | 3632055..3632285 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZX95_RS17420 | 3632388..3633044 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZX95_RS17425 | 3633068..3633730 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T211359 NZ_CP080246:c3630154-3630052 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT211359 NZ_CP080246:3630014-3630282 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
