Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1993530..1993801 | Replicon | chromosome |
| Accession | NZ_CP080133 | ||
| Organism | Escherichia coli strain PK8277 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1993660..1993763 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1993530..1993801 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZY04_RS09570 | 1990085..1990747 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KZY04_RS09575 | 1990771..1991427 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZY04_RS09580 | 1991529..1991759 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZY04_RS09585 | 1991898..1992272 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| KZY04_RS09590 | 1992276..1993148 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| KZY04_RS09595 | 1993161..1993502 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1993530..1993801 | - | 272 | - | - | Antitoxin |
| - | 1993660..1993763 | + | 104 | - | - | Toxin |
| KZY04_RS09600 | 1993898..1994554 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| KZY04_RS09605 | 1994555..1994746 | - | 192 | WP_001313035.1 | YebW family protein | - |
| KZY04_RS09610 | 1994851..1995087 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZY04_RS09615 | 1995205..1996644 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1956640..2009639 | 52999 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210997 NZ_CP080133:1993660-1993763 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210997 NZ_CP080133:c1993801-1993530 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
