Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1970951..1971222 | Replicon | chromosome |
| Accession | NZ_CP080075 | ||
| Organism | Escherichia coli strain 19SZHZ663Rt | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1971081..1971184 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1970951..1971222 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KZO16_RS09400 | 1967506..1968168 | - | 663 | WP_124053605.1 | exodeoxyribonuclease X | - |
| KZO16_RS09405 | 1968192..1968848 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KZO16_RS09410 | 1968950..1969180 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KZO16_RS09415 | 1969319..1969693 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KZO16_RS09420 | 1969697..1970569 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| KZO16_RS09425 | 1970582..1970923 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1970951..1971222 | - | 272 | - | - | Antitoxin |
| - | 1971081..1971184 | + | 104 | - | - | Toxin |
| KZO16_RS09430 | 1971319..1971975 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| KZO16_RS09435 | 1971976..1972167 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KZO16_RS09440 | 1972272..1972508 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KZO16_RS09445 | 1972626..1974065 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210643 NZ_CP080075:1971081-1971184 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT210643 NZ_CP080075:c1971222-1970951 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
