Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2217640..2217783 | Replicon | chromosome |
| Accession | NZ_CP079838 | ||
| Organism | Salmonella enterica subsp. salamae strain LHICA_SA3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2217678..2217781 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2217640..2217783 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMJ83_RS10635 | 2214062..2214760 | - | 699 | WP_000944281.1 | exodeoxyribonuclease X | - |
| JMJ83_RS10640 | 2214784..2215440 | - | 657 | WP_000100253.1 | carbon-nitrogen hydrolase family protein | - |
| JMJ83_RS10645 | 2215548..2215778 | - | 231 | WP_000856223.1 | DNA polymerase III subunit theta | - |
| JMJ83_RS10650 | 2215916..2216290 | + | 375 | WP_001664129.1 | CopC domain-containing protein YobA | - |
| JMJ83_RS10655 | 2216291..2217166 | + | 876 | WP_000979698.1 | copper homeostasis membrane protein CopD | - |
| JMJ83_RS10660 | 2217184..2217534 | + | 351 | WP_079974728.1 | YebY family protein | - |
| - | 2217640..2217783 | - | 144 | - | - | Antitoxin |
| - | 2217678..2217781 | + | 104 | - | - | Toxin |
| JMJ83_RS10665 | 2217921..2218262 | - | 342 | Protein_2101 | tyrosine-type recombinase/integrase | - |
| JMJ83_RS10670 | 2218456..2218635 | - | 180 | WP_001168919.1 | hypothetical protein | - |
| JMJ83_RS23995 | 2218977..2219969 | - | 993 | WP_257589998.1 | DUF4116 domain-containing protein | - |
| JMJ83_RS24000 | 2220218..2220991 | - | 774 | WP_257589999.1 | hypothetical protein | - |
| JMJ83_RS10680 | 2221593..2222078 | - | 486 | WP_046093209.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2210294..2240671 | 30377 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T210213 NZ_CP079838:2217678-2217781 [Salmonella enterica subsp. salamae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT210213 NZ_CP079838:c2217783-2217640 [Salmonella enterica subsp. salamae]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
