Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1856169..1856403 | Replicon | chromosome |
| Accession | NC_004741 | ||
| Organism | Shigella flexneri 2a str. 2457T | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1856170..1856273 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1856169..1856403 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S_RS10070 | 1852302..1852451 | + | 150 | Protein_1841 | transposase | - |
| S_RS25855 | 1852484..1853694 | - | 1211 | Protein_1842 | IS3 family transposase | - |
| S_RS10090 | 1853749..1854597 | + | 849 | Protein_1843 | IS3-like element IS600 family transposase | - |
| S_RS25860 | 1854714..1854995 | + | 282 | WP_005127484.1 | excisionase | - |
| S_RS28750 | 1854961..1856038 | + | 1078 | Protein_1845 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1856169..1856403 | + | 235 | - | - | Antitoxin |
| - | 1856170..1856273 | - | 104 | - | - | Toxin |
| S_RS10105 | 1856431..1856772 | - | 342 | WP_000976476.1 | YebY family protein | - |
| S_RS25875 | 1856785..1857657 | - | 873 | Protein_1847 | copper homeostasis membrane protein CopD | - |
| S_RS10120 | 1857661..1858035 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| S_RS10125 | 1858174..1858404 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| S_RS10130 | 1858506..1859162 | + | 657 | Protein_1850 | carbon-nitrogen hydrolase family protein | - |
| S_RS10135 | 1859186..1859848 | + | 663 | WP_000944268.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T20938 NC_004741:c1856273-1856170 [Shigella flexneri 2a str. 2457T]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT20938 NC_004741:1856169-1856403 [Shigella flexneri 2a str. 2457T]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
