Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2262551..2262719 | Replicon | chromosome |
| Accession | NZ_CP078110 | ||
| Organism | Cronobacter sakazakii strain MOD1-H322 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2262554..2262657 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2262551..2262719 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTK77_RS10615 (BTK77_010615) | 2257926..2259368 | + | 1443 | WP_080320618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BTK77_RS10620 (BTK77_010620) | 2259481..2259720 | + | 240 | WP_004386676.1 | YebV family protein | - |
| BTK77_RS10625 (BTK77_010625) | 2259845..2260036 | + | 192 | WP_004386675.1 | YebW family protein | - |
| BTK77_RS10630 (BTK77_010630) | 2260037..2260681 | - | 645 | WP_080320617.1 | metallophosphoesterase | - |
| BTK77_RS10635 (BTK77_010635) | 2261040..2261132 | - | 93 | WP_004386672.1 | hypothetical protein | - |
| BTK77_RS10640 (BTK77_010640) | 2261478..2261813 | - | 336 | WP_080320616.1 | hypothetical protein | - |
| BTK77_RS10645 (BTK77_010645) | 2261767..2262327 | - | 561 | WP_032968251.1 | hypothetical protein | - |
| - | 2262551..2262719 | + | 169 | - | - | Antitoxin |
| - | 2262554..2262657 | - | 104 | - | - | Toxin |
| BTK77_RS10650 (BTK77_010650) | 2262796..2263134 | - | 339 | WP_080320615.1 | YebY family protein | - |
| BTK77_RS10655 (BTK77_010655) | 2263149..2264018 | - | 870 | WP_080320614.1 | copper homeostasis membrane protein CopD | - |
| BTK77_RS10660 (BTK77_010660) | 2264023..2264397 | - | 375 | WP_007900668.1 | CopC domain-containing protein YobA | - |
| BTK77_RS10665 (BTK77_010665) | 2264544..2264774 | + | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| BTK77_RS10670 (BTK77_010670) | 2264846..2265508 | + | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| BTK77_RS10675 (BTK77_010675) | 2265505..2267568 | - | 2064 | WP_080320613.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T208993 NZ_CP078110:c2262657-2262554 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT208993 NZ_CP078110:2262551-2262719 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
