Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 2500914..2501430 | Replicon | chromosome |
| Accession | NZ_CP077997 | ||
| Organism | Pseudomonas aeruginosa strain SRRSH1521 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | KUU75_RS11915 | Protein ID | WP_222829503.1 |
| Coordinates | 2501149..2501430 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A482UCX2 |
| Locus tag | KUU75_RS11910 | Protein ID | WP_033942931.1 |
| Coordinates | 2500914..2501159 (+) | Length | 82 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KUU75_RS11890 (KUU75_11890) | 2496146..2497762 | - | 1617 | WP_010794484.1 | hypothetical protein | - |
| KUU75_RS11895 (KUU75_11895) | 2497773..2498930 | - | 1158 | WP_010794485.1 | site-specific integrase | - |
| KUU75_RS31090 (KUU75_11900) | 2499028..2499162 | - | 135 | WP_261990960.1 | hypothetical protein | - |
| KUU75_RS11900 (KUU75_11905) | 2499155..2499592 | - | 438 | WP_222829520.1 | S24 family peptidase | - |
| KUU75_RS11905 (KUU75_11910) | 2500031..2500729 | + | 699 | WP_222829502.1 | inovirus Gp2 family protein | - |
| KUU75_RS11910 (KUU75_11915) | 2500914..2501159 | + | 246 | WP_033942931.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| KUU75_RS11915 (KUU75_11920) | 2501149..2501430 | + | 282 | WP_222829503.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| KUU75_RS11920 (KUU75_11925) | 2501499..2501672 | - | 174 | WP_222829504.1 | hypothetical protein | - |
| KUU75_RS11925 (KUU75_11930) | 2501683..2502180 | - | 498 | WP_222829505.1 | DNA repair protein RadC | - |
| KUU75_RS11930 (KUU75_11935) | 2502152..2503102 | - | 951 | WP_222829506.1 | hydrolase or metal-binding protein | - |
| KUU75_RS11935 (KUU75_11940) | 2503195..2504199 | - | 1005 | WP_222829507.1 | YqaJ viral recombinase family protein | - |
| KUU75_RS11940 (KUU75_11945) | 2504277..2505245 | - | 969 | WP_222829508.1 | DUF932 domain-containing protein | - |
| KUU75_RS11945 (KUU75_11950) | 2505343..2505672 | - | 330 | WP_261990959.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2472536..2510143 | 37607 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10777.67 Da Isoelectric Point: 10.7574
>T208831 WP_222829503.1 NZ_CP077997:2501149-2501430 [Pseudomonas aeruginosa]
MTYKLEFLPSALKEWEKLGHTLREQAKKKLRERLEAPKVQTDALRDLPGHYKIKLRTAGYRLVYRVEDDRVVVVVVAVGK
RERGAAYKAAAKR
MTYKLEFLPSALKEWEKLGHTLREQAKKKLRERLEAPKVQTDALRDLPGHYKIKLRTAGYRLVYRVEDDRVVVVVVAVGK
RERGAAYKAAAKR
Download Length: 282 bp
>T208831 NZ_CP103742:291052-291579 [Escherichia coli O25b:H4-ST131]
ATGGATGATCTGACGATAGAGATTCTGACCGATGATGCAGATTATGATCTACAGCGATTCGACTGCGGCGAGGAAGCATT
AAATCTCTTTCTGACGACACATCTGGTTCGTCAACATCGCAATAAAATTCTGCGAGCGTATATCCTGTGTCGCAACACTC
CAGAACGTCAGGTGCTGGGATATTACACATTATCCGGCAGTTGTTTTGAACGAGCCGCACTGCCCTCGAAATCGAAACAG
AAAAAAATTCCCTACAAAAATATTCCCAGCGTAACTCTTGGGCGTCTGGCAATTGATCGTTCATTACAGGGGCAGGGATG
GGGAGCAACACTGGTTGCTCATGCCATGAAAGTTGTCTGGTCAGCCTCTTTAGCGGTAGGTATTCACGGTCTTTTTGTCG
AGGCGCTGAATGAAAAAGCCCATACGTTTTATCAGTCGCTGGGCTTTATCCCATTGGTCGGAGAAAACGAAAATGCGTTA
TTTTTCCCGACCAAATCTATAGAGCTACTTTTTACACCAGACGATTAA
ATGGATGATCTGACGATAGAGATTCTGACCGATGATGCAGATTATGATCTACAGCGATTCGACTGCGGCGAGGAAGCATT
AAATCTCTTTCTGACGACACATCTGGTTCGTCAACATCGCAATAAAATTCTGCGAGCGTATATCCTGTGTCGCAACACTC
CAGAACGTCAGGTGCTGGGATATTACACATTATCCGGCAGTTGTTTTGAACGAGCCGCACTGCCCTCGAAATCGAAACAG
AAAAAAATTCCCTACAAAAATATTCCCAGCGTAACTCTTGGGCGTCTGGCAATTGATCGTTCATTACAGGGGCAGGGATG
GGGAGCAACACTGGTTGCTCATGCCATGAAAGTTGTCTGGTCAGCCTCTTTAGCGGTAGGTATTCACGGTCTTTTTGTCG
AGGCGCTGAATGAAAAAGCCCATACGTTTTATCAGTCGCTGGGCTTTATCCCATTGGTCGGAGAAAACGAAAATGCGTTA
TTTTTCCCGACCAAATCTATAGAGCTACTTTTTACACCAGACGATTAA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8653.98 Da Isoelectric Point: 4.1469
>AT208831 WP_033942931.1 NZ_CP077997:2500914-2501159 [Pseudomonas aeruginosa]
MQSVLADVAVSVSELKKNPTGVMAGAGGMPVAVLNHNRVMGYMVPAELYEQMLDRLDDLDLIDVVNARSGEKGVPVNLDD
L
MQSVLADVAVSVSELKKNPTGVMAGAGGMPVAVLNHNRVMGYMVPAELYEQMLDRLDDLDLIDVVNARSGEKGVPVNLDD
L
Download Length: 246 bp
>AT208831 NZ_CP103742:290779-291045 [Escherichia coli O25b:H4-ST131]
ATGTCTGCTGTTAAAAAGCAGCGTATTGATCTGCGTTTAACTGACGATGACAAAAGTATGATTGAGGAAGCGGCAGCGAT
ATCTAATCAGTCCGTCAGCCAATTTATGTTGAACAGCGCTTCGCAGCGAGCTGCGGAAGTGATTGAACAGCATCGGCGGA
TGATTCTCACTGAGGAATCCTGGACGCGGGTGATGGATGCGCTGAGTAATCCACCGTCACCAGGTGAAAAGCTAAAACGT
GCGGCAAAACGTCTTCAGGGAATGTAA
ATGTCTGCTGTTAAAAAGCAGCGTATTGATCTGCGTTTAACTGACGATGACAAAAGTATGATTGAGGAAGCGGCAGCGAT
ATCTAATCAGTCCGTCAGCCAATTTATGTTGAACAGCGCTTCGCAGCGAGCTGCGGAAGTGATTGAACAGCATCGGCGGA
TGATTCTCACTGAGGAATCCTGGACGCGGGTGATGGATGCGCTGAGTAATCCACCGTCACCAGGTGAAAAGCTAAAACGT
GCGGCAAAACGTCTTCAGGGAATGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|