Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3161133..3161278 | Replicon | chromosome |
| Accession | NZ_CP077820 | ||
| Organism | Klebsiella pneumoniae strain FF1013 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3161140..3161242 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3161133..3161278 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU668_RS15335 | 3156665..3158098 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KU668_RS15340 | 3158214..3158453 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KU668_RS15345 | 3158551..3158742 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KU668_RS15350 | 3158739..3159392 | - | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| KU668_RS15355 | 3159549..3160517 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KU668_RS15360 | 3160622..3160765 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3161133..3161278 | + | 146 | - | - | Antitoxin |
| - | 3161140..3161242 | - | 103 | - | - | Toxin |
| KU668_RS15365 | 3161401..3161739 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KU668_RS15370 | 3161756..3162625 | - | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| KU668_RS15375 | 3162629..3163003 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KU668_RS15380 | 3163116..3163346 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU668_RS15385 | 3163425..3164084 | + | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| KU668_RS15390 | 3164088..3166148 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207996 NZ_CP077820:c3161242-3161140 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207996 NZ_CP077820:3161133-3161278 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
