Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4648305..4648450 | Replicon | chromosome |
| Accession | NZ_CP077814 | ||
| Organism | Klebsiella pneumoniae strain FF1076 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4648312..4648414 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4648305..4648450 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU667_RS22720 (KU667_22630) | 4643837..4645270 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KU667_RS22725 (KU667_22635) | 4645386..4645625 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KU667_RS22730 (KU667_22640) | 4645723..4645914 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KU667_RS22735 (KU667_22645) | 4645911..4646564 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| KU667_RS22740 (KU667_22650) | 4646721..4647689 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KU667_RS22745 (KU667_22655) | 4647794..4647937 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4648305..4648450 | + | 146 | - | - | Antitoxin |
| - | 4648312..4648414 | - | 103 | - | - | Toxin |
| KU667_RS22750 (KU667_22660) | 4648573..4648911 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KU667_RS22755 (KU667_22665) | 4648928..4649797 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KU667_RS22760 (KU667_22670) | 4649801..4650175 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KU667_RS22765 (KU667_22675) | 4650288..4650518 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KU667_RS22770 (KU667_22680) | 4650597..4651256 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KU667_RS22775 (KU667_22685) | 4651260..4653320 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T207939 NZ_CP077814:c4648414-4648312 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT207939 NZ_CP077814:4648305-4648450 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
