Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1886975..1887209 | Replicon | chromosome |
| Accession | NC_004337 | ||
| Organism | Shigella flexneri 2a str. 301 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1886976..1887079 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1886975..1887209 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SF1843 | 1882952..1883254 | + | 303 | NP_707697.1 | insertion sequence element IS600 transposase | - |
| SF1846 | 1884174..1884500 | - | 327 | NP_707700.1 | insertion sequence element IS629 protein | - |
| SF1847 | 1884585..1885403 | + | 819 | NP_707701.1 | insertion sequence element IS600 protein | - |
| - | 1886975..1887209 | + | 235 | - | - | Antitoxin |
| - | 1886976..1887079 | - | 104 | - | - | Toxin |
| SF1850 | 1887237..1887578 | - | 342 | NP_707703.1 | hypothetical protein | - |
| SF1852 | 1888467..1888841 | - | 375 | NP_707704.1 | hypothetical protein | - |
| SF1853 | 1888980..1889210 | + | 231 | NP_707705.2 | DNA polymerase III subunit theta | - |
| SF1855 | 1889992..1890654 | + | 663 | NP_707706.2 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 1878093..1945707 | 67614 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T20785 NC_004337:c1887079-1886976 [Shigella flexneri 2a str. 301]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT20785 NC_004337:1886975-1887209 [Shigella flexneri 2a str. 301]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
