Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2783873..2783967 Replicon chromosome
Accession NC_004088
Organism Yersinia pestis KIM10+

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2783874..2783967 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2783873..2783967 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
Y_RS13010 2779066..2781144 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
Y_RS13015 2781144..2782304 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
Y_RS13020 2782836..2783294 + 459 WP_002211098.1 hypothetical protein -
Y_RS13025 2783288..2783614 + 327 WP_002211097.1 DUF1493 family protein -
- 2783873..2783967 + 95 - - Antitoxin
- 2783874..2783967 - 94 - - Toxin
Y_RS13035 2784137..2784478 - 342 WP_002211095.1 YebY family protein -
Y_RS13040 2784575..2785459 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
Y_RS13045 2785462..2785848 - 387 WP_002211093.1 CopC domain-containing protein YobA -
Y_RS13050 2786245..2786754 - 510 WP_002211092.1 non-heme ferritin -
Y_RS13055 2787155..2787385 + 231 WP_002211091.1 DNA polymerase III subunit theta -
Y_RS13060 2787445..2788395 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T20753 NC_004088:c2783967-2783874 [Yersinia pestis KIM10+]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT20753 NC_004088:2783873-2783967 [Yersinia pestis KIM10+]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References