Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2123885..2124029 | Replicon | chromosome |
| Accession | NZ_CP077411 | ||
| Organism | Enterobacter asburiae strain FDAARGOS 1432 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123891..2123994 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2123885..2124029 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L62_RS10185 (I6L62_10185) | 2119042..2120490 | + | 1449 | WP_217073134.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6L62_RS10190 (I6L62_10190) | 2120597..2120836 | + | 240 | WP_008500472.1 | YebV family protein | - |
| I6L62_RS10195 (I6L62_10195) | 2120871..2121515 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| I6L62_RS10200 (I6L62_10200) | 2121682..2122623 | + | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| I6L62_RS10205 (I6L62_10205) | 2122797..2123693 | + | 897 | WP_064672719.1 | benzoate transporter | - |
| - | 2123885..2124029 | + | 145 | - | - | Antitoxin |
| - | 2123891..2123994 | - | 104 | - | - | Toxin |
| I6L62_RS10210 (I6L62_10210) | 2124133..2124471 | - | 339 | WP_033145840.1 | YebY family protein | - |
| I6L62_RS10215 (I6L62_10215) | 2124488..2125357 | - | 870 | WP_217073135.1 | copper homeostasis membrane protein CopD | - |
| I6L62_RS10220 (I6L62_10220) | 2125359..2125730 | - | 372 | WP_217073136.1 | CopC domain-containing protein YobA | - |
| I6L62_RS10225 (I6L62_10225) | 2125867..2126097 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| I6L62_RS10230 (I6L62_10230) | 2126208..2126858 | + | 651 | WP_217073137.1 | carbon-nitrogen hydrolase family protein | - |
| I6L62_RS10235 (I6L62_10235) | 2126883..2127545 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T207166 NZ_CP077411:c2123994-2123891 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT207166 NZ_CP077411:2123885-2124029 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
